The 2006-07 Azerbaijan Top League was contested by thirteen teams and won by FK Khazar Lenkoran. At the end of the season the league was dissolved and replaced by the Azerbaijan Premier League.
| Pos | Team | P | W | D | L | F | A | Pts |
|---|---|---|---|---|---|---|---|---|
| 1 | FK Khazar Lenkoran | 24 | 17 | 5 | 2 | 50 | 16 | 56 |
| 2 | PFC Neftchi Baku | 24 | 17 | 3 | 4 | 47 | 15 | 54 |
| 3 | FK Baku | 24 | 14 | 6 | 4 | 25 | 10 | 48 |
| 4 | FC Inter Baku | 24 | 13 | 6 | 5 | 36 | 12 | 45 |
| 5 | FK MKT Araz Imisli | 24 | 12 | 5 | 7 | 23 | 18 | 41 |
| 6 | FK Olimpik Baku | 24 | 11 | 8 | 5 | 28 | 17 | 41 |
| 7 | FK Karvan | 24 | 10 | 5 | 9 | 36 | 30 | 35 |
| 8 | FK Karabakh | 24 | 6 | 9 | 9 | 20 | 27 | 27 |
| 9 | FK Simurq Zaqatala | 24 | 6 | 7 | 11 | 27 | 33 | 25 |
| 10 | PFC Turan Tovuz | 24 | 5 | 5 | 14 | 24 | 38 | 20 |
| 11 | Gilan Qäbälä | 24 | 4 | 4 | 16 | 17 | 47 | 16 |
| 12 | FK Gänclärbirliyi Sumqayit | 24 | 3 | 3 | 18 | 16 | 54 | 12 |
| 13 | FC Sahdag Qusar | 24 | 1 | 8 | 15 | 15 | 47 | 11 |
FK Gäncä was excluded from the league.
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